Presentations, reading list and paper suggestions
Throughout the course, we have mentioned some key papers that might be of interest for those wanting to learn more about the key concepts and tools we used. Here we have collated a reading list that includes those papers. ** Note - this list is not meant to be definitive, there are many other great ones available!**
Speciation genomics - general introduction
- Turner et al 2005 PloS Biology
- Turner & Hahn 2007 Molecular Biology and Evolution
- Wu 2001 Journal of Evolutionary Biology
- Wu & Ting 2001 Nature Reviews Genetics
- Nosil et al 2009 Molecular Ecology
- Feder et al 2012 Trends in Genetics
- Abbot et al 2013 Journal of Evolutionary Biology
- Maddison 1997 Systematic Biology
- Wolf & Ellegren 2017 Nature Reviews Genetics
- Ravinet et al 2017 Journal of Evolutionary Biology
- Seehausen et al 2014 Nature Reviews Genetics
- Martin et al 2013 Genome Research
- Noor & Bennett 2008 Heredity
- Cruickshank & Hahn 2014 Molecular Ecology
- Burri et al 2015 Genome Research
- Meier et al 2017 Molecular Ecology
- Meier et al 2017 Nature Communications
- Martin & Jiggins 2017 Current Biology
Genome assembly, alignment and variant calling
- Ellegren 2014 Trends in Ecology and Evolution
- Nielsen et al 2011 Nature Reviews Genetics
- Catchen et al 2011 G3
- Catchen et al 2013 Molecular Ecology
Inferring population structure and admixture
- Lawson et al 2018 Nature Communications
- Patterson et al 2012 Genetics
- Peters 2016 Genetics
- Pickrell & Pritchard 2012 PloS Genetics
- Freedman et al 2014 PLoS Genetics
Demographic inference
- Sousa & Hey 2013 Nature Reviews Genetics
- Schraiber & Akey 2015 Nature Reviews Genetics
- Excoffier et al 2009 PloS Computational Biology
- Gutenkunst 2009 PLoS Genetics
- Meier et al 2017 Molecular Ecology
Genome scans to detect signatures of selection
- Martin et al 2015 Molecular Biology and Evolution
- Martin & Van Belleghem 2017 Genetics
- Meier et al 2018 Molecular Biology and Evolution
- Stankowski et al 2019 PLoS Biology
- Moest et al 2020 PLoS Biology
- Lee and Coop 2019 Philosophical Transactions of the Royal Society B
- Barghi et al 2020 Nature Review Genetics